Creates and plays an animation of the current structure.
Zoom Out (or Cmd-).
To stop, release the Cmd- keys, click or press any key.
If the zoom operation is performed with the Control key down, the visible surrounding of the rotation atom will be diminished.
Zoom In (or Cmd+).
To stop, release the Cmd+ keys, click or press any key.
If the zoom operation is performed with the Control key down, the visible surrounding of the rotation atom will be increased.
The Report window is used to show all operations requested by the user and their results.
Checked because this is the front window.
The Report window is used to show all operations requested by the user and their results.
The Image window displays the structure in memory and takes its name.
Checked because this is the front window.
The Image window displays the structure in memory and takes its name.
Clear the content of the Report window.
Closes and disposes the Front window (note that the Report and Image windows can't be disposed of).
The Option key closes all windows of the same kind.
Windows Menu.
Use this menu to do the usual window manipulations.
Automatic batch transposition of the original text structure files into binaries. Up to 400 files can be batch processed this way.
It is possible to File/'Pause' this lengthly operation.
Gives access to development tools.
Not available in the released version.
Dialog to write down a series of structural parameters. Results can be written to the Report window or to the disk.
Not available because there is no current structure.
Dialog to write down a series of structural parameters. Results can be written to the Report window or to the disk.
Dialog to select portions of the current structure like individual chains or models. Multiple choices are possible.
Not available because there is no current structure.
Dialog to select portions of the current structure like individual chains or models. Multiple choices are possible.
Not available in the released version.
Dialog to create Ramachandran plots, hydrogen or disulfide bonds plots of the current structure or of all the structures contained in the 'Batch Fldr'. Histograms of bond length, angles, and torsion angles can be also created.
Dialog to determine the electron density map parameters.
Not available in the released version.
Dialog to determine the electron density map parameters.
Dialog to determine the steric parameters.
Standard Window Settings dialog to determine profiles and histograms parameters.
Dialog to define what structure files will be taken into account in batch operations.
Utilities Menu.
Used to perform several atom parameter or sequence analysis, to report structural parameters, to look for secondary structure or for steric conflicts.
Try this moderately on a structure that you just built yourself. No undo is implemented. To stop, click or press any key.
Not Available now because no turning atom has been selected.
To select a turning atom, Cmd-Double Click on an atom.
Try this moderately on a structure that you just built yourself. No undo is implemented. To stop, click or press any key.
Turn a bond counterclockwise (Cmd/).
Not Available now because no turning atom has been selected.
To select a turning atom, Cmd-Double Click on an atom.
Turn a bond counterclockwise (Cmd/).
Turn a bond clockwise (Cmd*).
Not Available now because no turning atom has been selected.
To select a turning atom, Cmd-Double Click on an atom.
Turn a bond clockwise (Cmd*).
Turn Bond menu.
Not Available now because no turning atom has been selected.
To select a turning atom, Cmd-Double Click on an atom.
Turn Bond Menu.
Checked because this is the current size.
Set the size of plotted lines to this many pixels square.
Checked because this is the current size.
Set the size of plotted lines to this many pixels square.
Checked because this is the current size.
Set the size of plotted lines to this many pixels square.
Checked because this is the current size.
Set the size of plotted lines to this many pixels square.
NOT IMPLEMENTED YET.
Saves animations in a binary (suffix '.Anim').
This binary will be later recognized by FoldIt (light).
Not available now because no animation has been created.
Saves animations in a binary (suffix '.Anim').
This binary will be later recognized by FoldIt (light).
Saves the content of the utility window in a binary (suffix '.MotivW' for sequence stat histograms).
This binary will be later recognized by FoldIt (light).
Not available now because the Front Window is not a MotivW.
Saves the content of the utility window in a binary (suffix '.MotivW' for sequence stat histograms).
This binary will be later recognized by FoldIt (light).
Saves the content of the utility window in a binary (suffix '.AroundW' for sequence stat histograms).
This binary will be later recognized by FoldIt (light).
Not available now because the Front Window is not a AroundW.
Saves the content of the utility window in a binary (suffix '.AroundW' for sequence stat histograms).
This binary will be later recognized by FoldIt (light).
Saves the content of the utility window in a binary (suffix '.StatW' for sequence stat histograms).
This binary will be later recognized by FoldIt (light).
Not available now because the Front Window is not a StatW.
Saves the content of the utility window in a binary (suffix '.StatW' for sequence stat histograms).
This binary will be later recognized by FoldIt (light).
Saves the content of the utility window in a binary (suffix '.HbdW' for hydrogen bond plots).
This binary will be later recognized by FoldIt (light).
Not available now because the Front Window is not a HbdW.
Saves the content of the utility window in a binary (suffix '.HbdW' for hydrogen bond plots).
This binary will be later recognized by FoldIt (light).
